ALIGNER
Detecting and Aligning Related Protein Sequences
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A maximum of 100 FASTA format sequences is allowed
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Alignment algorithm
ALIGNER ver 1.0 (strict matching)
ALIGNER ver 2.0 (permissive matching)
Opening gap penalty
Extension gap penalty
Min matching substitution score
Substitution matrix
BLOSUM 62
PAM 250
VTML 200
Alignment refinment
With refinment
Without refinment
Labels of the guide trees' leaves
Use the sequences' names
Use the sequences' input order
Redundancy
Keep redundant sequences
Withdraw redundant sequences
Output alignment format
CLUSTAL
FASTA
NATIVE
Please report bugs and comments to:
Abdellali.Kelil@USherbrooke.ca