·         Comparison study on k-word statistical measures for protein: From sequence to 'sequence space'

Qi Dai and Tianming Wang

BMC Bioinformatics, vol. 9, 2008


·         Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus

Xiaohan Yang, Sara Jawdy, Timothy J. Tschaplinski, Gerald A. Tuskan

Genomics, 2009


·         Computer-Assisted Automatic Classifications, Storage, Queries and Functional Assignments of Orthologs and In-Paralogs Proteins

Thybert, David; Avner, Stephane; Lucchetti-Miganeh, Celine; Barloy-Hubler, Frederique

Current Bioinformatics, Bentham Science Publishers, Volume 4, Number 2, May 2009 , pp. 129-140(12)


·         Similarly Strong Purifying Selection Acts on Human Disease Genes of All Evolutionary Ages

James J. Cai, Elhanan Borenstein, Rong Chen, and Dmitri A. Petrov

Genome Biology and Evolution, Oxford Journals. 0:131, May 2009.


·         Using Affinity Propagation Combined Post-processing to Cluster Protein Sequences

Yang F, Zhu Q, Tang D, Zhao M

Protein & Peptide Letters, 2009 Nov 1.


·         Characterization of Resistance Gene Analogs in Musa acuminata Cultivars Contrasting in Resistance to Biotic Stresses

F L Emediato, F A C Nunes, C de Camargo Teixeira, M A N Passos, D J Bertioli, G J Pappas Jr & R N G Miller*

Q.Y. Shu (ed.), Induced Plant Mutations in the Genomics Era. Food and Agriculture Organization of the United Nations, Rome, 2009, 443-445


·         Partially-supervised protein subclass discovery with simultaneous annotation of functional residues

Benjamin Georgi, Jorg Schultz, Alexander Schliep

BMC Structural Biology 2009, 9:68 doi:10.1186/1472-6807-9-68





·         A Review on Protein Sequence Clustering Research

Noor Azuan Abu Osman, Fatimah Ibrahim, Wan Abu Bakar Wan Abas, Herman Shah Abdul Rahman and Hua-Nong Ting

4th Kuala Lumpur International Conference on Biomedical Engineering (BIOMED’08) 25–28 June 2008, Kuala Lumpur, Malaysia.


·         Genome-scale comparative analysis of the predicted secretomes of 19 sequenced lactic acid bacteria

Miaomiao Zhou, Daniel Theunissen, Michiel Wels, Roland Siezen

16th Annual International Conference Intelligent Systems for Molecular Biology. 19–23 July 2008. Toronto, Canada.


·         Abu Bakar, Sakhinah, Javid Taheri, Albert Y. Zomaya

Fuzzy systems modeling for protein-protein interaction prediction in Saccharomyces cerevisie

The 18th World IMACS / MODSIM Congress, Cairns, Australia 13-17 July 2009.





·         Medicinal Protein Engineering

Yury E. Khudyakov

Edition: illustrated

Published by CRC Press, 2008

ISBN 0849373689, 9780849373688

592 pages


·         Prediction of Protein Structures, Functions, and Interactions

Published Online: 18 Dec 2008

Editor(s): Janusz M. Bujnicki

Print ISBN: 9780470517673

Online ISBN: 9780470741894

DOI: 10.1002/9780470741894

Copyright © 2009 John Wiley & Sons, Ltd


·         Handbook of Research on Systems Biology Applications in Medicine, Volume 2

Andriani Daskalaki

ISBN: 9781605660769

Hardcover: 2008/11/30