CLUSS clustering result Executing time : 81 ------------------------------------------------- ------------------------------------------------- Number of sub-families: 31 ------------------------------------------------- Sub-family 1: 18 sequences 0 AF1424 2 MA1956 3 MTH770 5 MK0820 4 MJ1108 8 PH0657 9 PAB2427 1 VNG2505G 10 PAE1669 12 APE2305 11 SSO0101 17 ECU04g0900 13 YLR060w 15 SPAC23A1.12c 6 Ta0551 7 TVN0605 62 TP0015 63 BB0514 ------------------------------------------------- Sub-family 2: 43 sequences 18 aq_1730_2 19 TM0822_2 20 FN2122_2 22 CAC2356_2 21 DR2357_2 36 pheT_2 37 ZpheT_2 40 STM1338_2 38 ECs2420_2 39 YPO2428_2 42 VC1220_2 44 HI1312_2 45 PM0629_2 43 PA2739_2 46 XF0742_2 47 NMB0728_2 48 NMA0937_2 49 RSc1582_2 27 L0355_2 28 SPy0769_2 29 SP0581_2 30 SA0986_2 31 lin1185_2 32 BS_pheT_2 33 BH3110_2 34 sll1553_2 35 alr4958_2 23 Cgl1357_2 24 Rv1650_2 25 MT1688_2 26 ML1402_2 53 AGc445_2 54 SMc00366_2 56 mll5053_2 55 BMEI2004_2 57 CC1043_2 60 CT475_2 61 CPn0594_2 50 HP0402_2 51 jhp0979_2 52 Cj0896c_2 58 RP418_2 59 RC0582_2 ------------------------------------------------- Sub-family 3: 1 sequences 296 CAC3611 ------------------------------------------------- Sub-family 4: 6 sequences 297 Rv3080c_2 298 MT3165_2 305 PA1759 307 PA3420 308 PA3921 306 PA1760 ------------------------------------------------- Sub-family 5: 6 sequences 299 malT 300 ZmalT 301 ECs4260 303 STM3515 302 YPO0123 304 VCA0011 ------------------------------------------------- Sub-family 6: 5 sequences 41 BU130_2 64 UU457_2 65 MYPU_3470_2 66 MPN106_2 67 MG195_2 ------------------------------------------------- Sub-family 7: 5 sequences 162 NMA1611 412 YDR159w 413 SPCC576.05 414 SPCC70.06 415 ECU04g1260 ------------------------------------------------- Sub-family 8: 26 sequences 270 SSO1333 275 Cgl2279 276 Rv0467 279 MT0483 274 DR0828 290 RSc1358 283 aceA 285 ECs4933 287 STM4184 284 ZaceA 286 YPO3725 288 VC0736 282 BH2677 291 AGc1079 292 SMc00768 294 mll6527 293 BMEI0409 277 Rv1915 280 MT1966 281 ML1985 289 PA2634 295 CC1764 271 YER065c 272 YPR006c 278 Rv1916 273 SPBC1683.11c ------------------------------------------------- Sub-family 9: 17 sequences 364 CAC2956 365 SPy1709 366 SP0647 367 SA0238 371 BH0190 370 lin2814 372 gatC 375 ZgatC 376 ECs2895 379 STM3260 374 Z4877 377 ECs4352 380 STM3782 368 lin0508 373 sgcC 378 STM1614 369 lin2200 ------------------------------------------------- Sub-family 10: 73 sequences 185 AF0186 186 AF0564 242 RSp0173 194 aq_739 188 MA2718 189 MA3264 198 CAC2234 213 lin1548 249 mll5865 218 BS_yrvO 220 BH1260 205 L111126 211 SA1450 208 SPy1122 210 SP1094 190 YCL017c 191 SPBC21D10.11c 192 ECU11g1770 252 RP486 254 RC0730 227 yfhO 228 ZyfhO 229 ECs3396 231 YPO2896 232 STM2543 234 VC0748 236 PA3814 238 PM0318 233 BU602 239 NMB1379 237 HI0378 241 RSc1019 235 PA2062 223 slr0387 225 alr2505 230 YPO2138 195 TM1692 196 FN0058 224 all1457 243 HP0220 244 jhp0206 245 Cj0240c 199 CAC2972 212 SA1538 200 Cgl1043 206 L122222 209 SP0880 207 SPy0816 214 lin1635 221 BH3204 217 BS_nifZ 215 lin2130 216 BS_nifS 187 MA0808 197 DR0215 201 Cgl1203 202 Rv3025c 203 MT3109 204 ML1708 246 AGc3350 247 SMc00529 250 mlr0015 248 BMEI1043 251 CC1865 222 sll0704 226 alr3088 193 aq_1053 253 RP487 255 RC0731 256 CT258 258 CPn0396 219 BH1217 260 TP0863 ------------------------------------------------- Sub-family 11: 6 sequences 179 AF0028 181 MA0722 180 AF0181 184 MK0229 182 MTH1067 183 MJ1678 ------------------------------------------------- Sub-family 12: 2 sequences 257 CT721 259 CPn0862 ------------------------------------------------- Sub-family 13: 5 sequences 416 YAL021c_2 421 SPCC31H12.08c_2 417 YML118w 418 YMR285c 420 SPBC9B6.11c ------------------------------------------------- Sub-family 14: 9 sequences 261 AF1838 267 TM1643 262 MA0958 263 MTH973 264 MJ0915 268 PA3505 269 RSp0722 265 MK0094 266 PAE3114_2 ------------------------------------------------- Sub-family 15: 3 sequences 381 MTH1145 382 MJ0489 383 MK0014 ------------------------------------------------- Sub-family 16: 18 sequences 321 FN0469 322 L56431 323 SPy0408 324 SP1260 325 lin0025 326 lin1017 327 cutCm 328 ZcutCm 331 STM1907 330 YPO2048 337 mlr1122 332 VC0730 335 AGc4698 338 CC2360 336 SMc02879 333 PM0526 334 XF1341 329 ECs2584 ------------------------------------------------- Sub-family 17: 2 sequences 340 Rv1927 341 MT1979 ------------------------------------------------- Sub-family 18: 39 sequences 139 TM0066 140 CAC0394 145 BS_kdgA 146 BH3723 141 CAC2973 142 L0022 143 SPy0639 144 SP0317 150 eda 151 Zeda 152 ECs2560 154 STM1884 153 YPO2067 158 HI0047 159 PM0947 168 AGl750 171 SMc03153 172 BMEII0009 174 mlr2994 165 HP1099 166 jhp1025 155 VC0285 164 RSp1190 178 TP0568 156 PA3131 161 NMB1394 157 PA3181 160 XF1061 170 SMc02043 149 dgoA_1 163 RSc2752 176 CC0784 167 AGc1269 169 SMc00882 173 BMEII0358 175 mlr4743 147 sll0107 148 all4771 177 CC1495 ------------------------------------------------- Sub-family 19: 10 sequences 77 YJR137c_3 78 SPAC10F6.01c_3 392 Cgl0883 393 L13744 394 SPy2162 398 NMB1955 396 SAP005 395 SP1625 397 all3255 419 YOL042w ------------------------------------------------- Sub-family 20: 2 sequences 339 VNG1746C 342 BS_yqjF ------------------------------------------------- Sub-family 21: 20 sequences 343 L51420_1 344 SPy0980_1 347 lin0080_1 348 lin2418_1 349 Z1818_1 350 ECs1557_1 352 YPO2126 360 XF2506_2 362 BMEI0899 363 BMEI1663 351 YPO2093 354 PA2423 355 HI1418 356 XF0684_1 361 XF2524_1 359 XF1663_1 357 XF0704 358 XF1645 345 SPy2127 346 SPy2128 ------------------------------------------------- Sub-family 22: 4 sequences 384 MA4548 386 MJ0844 385 MTH1166 387 MK0653 ------------------------------------------------- Sub-family 23: 54 sequences 69 MA0361 70 MA0363 75 MJ0298 87 CAC0203 85 FN1037 406 SMa0616 72 MA2699 97 BS_ykuN 98 BS_ykuP 92 L197697 93 SPy0721 94 SP1297 95 lin1822 79 FN0029 82 FN0513 88 CAC0587 138 TP0925 89 CAC2452 81 FN0472 137 Cj1382c 83 FN0724 135 HP1161 136 jhp1088 99 sll0248 100 alr2405 102 fldB 107 ZfldB 111 ECs3767 120 STM3045 114 YPO0893 125 VC2420 101 fldA 106 ZfldA 109 ECs0715 118 STM0694 117 YPO2635 127 HI0191 129 PM0353 124 VC2099 122 BU299 103 mioC 108 ZmioC 112 ECs4684 121 STM3875 113 YPO0001 128 HI0669 130 PM1484 123 VC0002 104 yqcA 105 Z4106 110 ECs3650 119 STM2963 115 YPO1039 126 PA3435 ------------------------------------------------- Sub-family 24: 15 sequences 68 AF2332 71 MA0407 91 CAC3664 76 MK0288 73 MTH1799 132 RSc0187 133 RSc1509 74 MTH847 96 lin2257 131 XF1198 84 FN0772 86 FN1822 80 FN0119 90 CAC3417 422 ECU11g0770_2 ------------------------------------------------- Sub-family 25: 5 sequences 353 PA1153 391 PA0806 388 DR2024 390 all4478 389 SA1937 ------------------------------------------------- Sub-family 26: 1 sequences 240 NMA1594 ------------------------------------------------- Sub-family 27: 13 sequences 116 YPO2003 318 Cj0785 319 AGl919 320 SMa1239 309 napD 310 ZnapD 311 ECs3096 313 STM2260 312 YPO3039 316 HI0343 317 PM1593 314 VCA0677 315 PA1175 ------------------------------------------------- Sub-family 28: 3 sequences 14 YPR047w_2 16 SPCC736.03c_2 134 RSc1510 ------------------------------------------------- Sub-family 29: 1 sequences 399 NMA0496 ------------------------------------------------- Sub-family 30: 6 sequences 400 VC1440 401 NMA1978 402 RSc1278 403 HP0146 404 jhp0134 405 Cj1488c ------------------------------------------------- Sub-family 31: 5 sequences 407 SMa0767 408 SMa1214 409 msl6627 410 msr6413 411 CC1403 -------------------------------------------------